Updated Doxygen to 1.8.6

Doxyfile

@@ -1,11 +1,11 @@
-# Doxyfile 1.8.5
+# Doxyfile 1.8.6
 
 # This file describes the settings to be used by the documentation system
 # doxygen (www.doxygen.org) for a project.
-# 
+#
 # All text after a double hash (##) is considered a comment and is placed in
 # front of the TAG it is preceding.
-# 
+#
 # All text after a single hash (#) is considered a comment and will be ignored.
 # The format is:
 # TAG = value [value, ...]
@@ -73,12 +73,14 @@ CREATE_SUBDIRS         = NO
 # The OUTPUT_LANGUAGE tag is used to specify the language in which all
 # documentation generated by doxygen is written. Doxygen will use this
 # information to generate all constant output in the proper language.
-# Possible values are: Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-
-# Traditional, Croatian, Czech, Danish, Dutch, English, Esperanto, Farsi,
-# Finnish, French, German, Greek, Hungarian, Italian, Japanese, Japanese-en,
-# Korean, Korean-en, Latvian, Norwegian, Macedonian, Persian, Polish,
-# Portuguese, Romanian, Russian, Serbian, Slovak, Slovene, Spanish, Swedish,
-# Turkish, Ukrainian and Vietnamese.
+# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Catalan, Chinese,
+# Chinese-Traditional, Croatian, Czech, Danish, Dutch, English (United States),
+# Esperanto, Farsi (Persian), Finnish, French, German, Greek, Hungarian,
+# Indonesian, Italian, Japanese, Japanese-en (Japanese with English messages),
+# Korean, Korean-en (Korean with English messages), Latvian, Lithuanian,
+# Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese, Romanian, Russian,
+# Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish, Swedish, Turkish,
+# Ukrainian and Vietnamese.
 # The default value is: English.
 
 OUTPUT_LANGUAGE        = English
@@ -92,7 +94,7 @@ BRIEF_MEMBER_DESC      = YES
 
 # If the REPEAT_BRIEF tag is set to YES doxygen will prepend the brief
 # description of a member or function before the detailed description
-# 
+#
 # Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the
 # brief descriptions will be completely suppressed.
 # The default value is: YES.
@@ -147,7 +149,7 @@ FULL_PATH_NAMES        = NO
 # part of the path. The tag can be used to show relative paths in the file list.
 # If left blank the directory from which doxygen is run is used as the path to
 # strip.
-# 
+#
 # Note that you can specify absolute paths here, but also relative paths, which
 # will be relative from the directory where doxygen is started.
 # This tag requires that the tag FULL_PATH_NAMES is set to YES.
@@ -192,7 +194,7 @@ QT_AUTOBRIEF           = NO
 # a brief description. This used to be the default behavior. The new default is
 # to treat a multi-line C++ comment block as a detailed description. Set this
 # tag to YES if you prefer the old behavior instead.
-# 
+#
 # Note that setting this tag to YES also means that rational rose comments are
 # not recognized any more.
 # The default value is: NO.
@@ -272,9 +274,9 @@ OPTIMIZE_OUTPUT_VHDL   = NO
 # C#, C, C++, D, PHP, Objective-C, Python, Fortran, VHDL. For instance to make
 # doxygen treat .inc files as Fortran files (default is PHP), and .f files as C
 # (default is Fortran), use: inc=Fortran f=C.
-# 
+#
 # Note For files without extension you can use no_extension as a placeholder.
-# 
+#
 # Note that for custom extensions you also need to set FILE_PATTERNS otherwise
 # the files are not read by doxygen.
 
@@ -353,7 +355,7 @@ SUBGROUPING            = YES
 # are shown inside the group in which they are included (e.g. using \ingroup)
 # instead of on a separate page (for HTML and Man pages) or section (for LaTeX
 # and RTF).
-# 
+#
 # Note that this feature does not work in combination with
 # SEPARATE_MEMBER_PAGES.
 # The default value is: NO.
@@ -510,6 +512,13 @@ HIDE_SCOPE_NAMES       = NO
 
 SHOW_INCLUDE_FILES     = YES
 
+# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each
+# grouped member an include statement to the documentation, telling the reader
+# which file to include in order to use the member.
+# The default value is: NO.
+
+SHOW_GROUPED_MEMB_INC  = NO
+
 # If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include
 # files with double quotes in the documentation rather than with sharp brackets.
 # The default value is: NO.
@@ -531,7 +540,8 @@ SORT_MEMBER_DOCS       = NO
 
 # If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief
 # descriptions of file, namespace and class members alphabetically by member
-# name. If set to NO the members will appear in declaration order.
+# name. If set to NO the members will appear in declaration order. Note that
+# this will also influence the order of the classes in the class list.
 # The default value is: NO.
 
 SORT_BRIEF_DOCS        = NO
@@ -656,7 +666,7 @@ FILE_VERSION_FILTER    =
 # that represents doxygen's defaults, run doxygen with the -l option. You can
 # optionally specify a file name after the option, if omitted DoxygenLayout.xml
 # will be used as the name of the layout file.
-# 
+#
 # Note that if you run doxygen from a directory containing a file called
 # DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE
 # tag is left empty.
@@ -688,7 +698,7 @@ QUIET                  = NO
 # The WARNINGS tag can be used to turn on/off the warning messages that are
 # generated to standard error ( stderr) by doxygen. If WARNINGS is set to YES
 # this implies that the warnings are on.
-# 
+#
 # Tip: Turn warnings on while writing the documentation.
 # The default value is: YES.
 
@@ -807,7 +817,7 @@ RECURSIVE              = NO
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
 # subdirectory from a directory tree whose root is specified with the INPUT tag.
-# 
+#
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
@@ -823,7 +833,7 @@ EXCLUDE_SYMLINKS       = NO
 # If the value of the INPUT tag contains directories, you can use the
 # EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude
 # certain files from those directories.
-# 
+#
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
 
@@ -834,7 +844,7 @@ EXCLUDE_PATTERNS       =
 # output. The symbol name can be a fully qualified name, a word, or if the
 # wildcard * is used, a substring. Examples: ANamespace, AClass,
 # AClass::ANamespace, ANamespace::*Test
-# 
+#
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories use the pattern */test/*
 
@@ -869,14 +879,14 @@ IMAGE_PATH             =
 # The INPUT_FILTER tag can be used to specify a program that doxygen should
 # invoke to filter for each input file. Doxygen will invoke the filter program
 # by executing (via popen()) the command:
-# 
+#
 # <filter> <input-file>
-# 
+#
 # where <filter> is the value of the INPUT_FILTER tag, and <input-file> is the
 # name of an input file. Doxygen will then use the output that the filter
 # program writes to standard output. If FILTER_PATTERNS is specified, this tag
 # will be ignored.
-# 
+#
 # Note that the filter must not add or remove lines; it is applied before the
 # code is scanned, but not when the output code is generated. If lines are added
 # or removed, the anchors will not be placed correctly.
@@ -920,7 +930,7 @@ USE_MDFILE_AS_MAINPAGE = README.md
 
 # If the SOURCE_BROWSER tag is set to YES then a list of source files will be
 # generated. Documented entities will be cross-referenced with these sources.
-# 
+#
 # Note: To get rid of all source code in the generated output, make sure that
 # also VERBATIM_HEADERS is set to NO.
 # The default value is: NO.
@@ -975,16 +985,16 @@ SOURCE_TOOLTIPS        = YES
 # source browser. The htags tool is part of GNU's global source tagging system
 # (see http://www.gnu.org/software/global/global.html). You will need version
 # 4.8.6 or higher.
-# 
+#
 # To use it do the following:
 # - Install the latest version of global
 # - Enable SOURCE_BROWSER and USE_HTAGS in the config file
 # - Make sure the INPUT points to the root of the source tree
 # - Run doxygen as normal
-# 
+#
 # Doxygen will invoke htags (and that will in turn invoke gtags), so these
 # tools must be available from the command line (i.e. in the search path).
-# 
+#
 # The result: instead of the source browser generated by doxygen, the links to
 # source code will now point to the output of htags.
 # The default value is: NO.
@@ -1072,7 +1082,7 @@ HTML_FILE_EXTENSION    = .html
 # The HTML_HEADER tag can be used to specify a user-defined HTML header file for
 # each generated HTML page. If the tag is left blank doxygen will generate a
 # standard header.
-# 
+#
 # To get valid HTML the header file that includes any scripts and style sheets
 # that doxygen needs, which is dependent on the configuration options used (e.g.
 # the setting GENERATE_TREEVIEW). It is highly recommended to start with a
@@ -1240,7 +1250,7 @@ DOCSET_PUBLISHER_NAME  = Publisher
 # index.hhp is a project file that can be read by Microsoft's HTML Help Workshop
 # (see: http://www.microsoft.com/en-us/download/details.aspx?id=21138) on
 # Windows.
-# 
+#
 # The HTML Help Workshop contains a compiler that can convert all HTML output
 # generated by doxygen into a single compiled HTML file (.chm). Compiled HTML
 # files are now used as the Windows 98 help format, and will replace the old
@@ -1408,7 +1418,7 @@ GENERATE_TREEVIEW      = NO
 
 # The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that
 # doxygen will group on one line in the generated HTML documentation.
-# 
+#
 # Note that a value of 0 will completely suppress the enum values from appearing
 # in the overview section.
 # Minimum value: 0, maximum value: 20, default value: 4.
@@ -1442,7 +1452,7 @@ FORMULA_FONTSIZE       = 10
 # Use the FORMULA_TRANPARENT tag to determine whether or not the images
 # generated for formulas are transparent PNGs. Transparent PNGs are not
 # supported properly for IE 6.0, but are supported on all modern browsers.
-# 
+#
 # Note that when changing this option you need to delete any form_*.png files in
 # the HTML output directory before the changes have effect.
 # The default value is: YES.
@@ -1537,11 +1547,11 @@ SERVER_BASED_SEARCH    = NO
 # which needs to be processed by an external indexer. Doxygen will invoke an
 # external search engine pointed to by the SEARCHENGINE_URL option to obtain the
 # search results.
-# 
+#
 # Doxygen ships with an example indexer ( doxyindexer) and search engine
 # (doxysearch.cgi) which are based on the open source search engine library
 # Xapian (see: http://xapian.org/).
-# 
+#
 # See the section "External Indexing and Searching" for details.
 # The default value is: NO.
 # This tag requires that the tag SEARCHENGINE is set to YES.
@@ -1550,7 +1560,7 @@ EXTERNAL_SEARCH        = NO
 
 # The SEARCHENGINE_URL should point to a search engine hosted by a web server
 # which will return the search results when EXTERNAL_SEARCH is enabled.
-# 
+#
 # Doxygen ships with an example indexer ( doxyindexer) and search engine
 # (doxysearch.cgi) which are based on the open source search engine library
 # Xapian (see: http://xapian.org/). See the section "External Indexing and
@@ -1604,7 +1614,7 @@ LATEX_OUTPUT           = latex
 
 # The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be
 # invoked.
-# 
+#
 # Note that when enabling USE_PDFLATEX this option is only used for generating
 # bitmaps for formulas in the HTML output, but not in the Makefile that is
 # written to the output directory.
@@ -1651,7 +1661,7 @@ EXTRA_PACKAGES         =
 # chapter. If it is left blank doxygen will generate a standard header. See
 # section "Doxygen usage" for information on how to let doxygen write the
 # default header to a separate file.
-# 
+#
 # Note: Only use a user-defined header if you know what you are doing! The
 # following commands have a special meaning inside the header: $title,
 # $datetime, $date, $doxygenversion, $projectname, $projectnumber. Doxygen will
@@ -1665,7 +1675,7 @@ LATEX_HEADER           =
 # The LATEX_FOOTER tag can be used to specify a personal LaTeX footer for the
 # generated LaTeX document. The footer should contain everything after the last
 # chapter. If it is left blank doxygen will generate a standard footer.
-# 
+#
 # Note: Only use a user-defined footer if you know what you are doing!
 # This tag requires that the tag GENERATE_LATEX is set to YES.
 
@@ -1714,7 +1724,7 @@ LATEX_HIDE_INDICES     = NO
 
 # If the LATEX_SOURCE_CODE tag is set to YES then doxygen will include source
 # code with syntax highlighting in the LaTeX output.
-# 
+#
 # Note that which sources are shown also depends on other settings such as
 # SOURCE_BROWSER.
 # The default value is: NO.
@@ -1762,7 +1772,7 @@ COMPACT_RTF            = NO
 # output) instead of page references. This makes the output suitable for online
 # browsing using Word or some other Word compatible readers that support those
 # fields.
-# 
+#
 # Note: WordPad (write) and others do not support links.
 # The default value is: NO.
 # This tag requires that the tag GENERATE_RTF is set to YES.
@@ -1772,7 +1782,7 @@ RTF_HYPERLINKS         = NO
 # Load stylesheet definitions from file. Syntax is similar to doxygen's config
 # file, i.e. a series of assignments. You only have to provide replacements,
 # missing definitions are set to their default value.
-# 
+#
 # See also section "Doxygen usage" for information on how to generate the
 # default style sheet that doxygen normally uses.
 # This tag requires that the tag GENERATE_RTF is set to YES.
@@ -1898,7 +1908,7 @@ GENERATE_AUTOGEN_DEF   = NO
 
 # If the GENERATE_PERLMOD tag is set to YES doxygen will generate a Perl module
 # file that captures the structure of the code including all documentation.
-# 
+#
 # Note that this feature is still experimental and incomplete at the moment.
 # The default value is: NO.
 
@@ -2085,6 +2095,13 @@ CLASS_DIAGRAMS         = YES
 
 MSCGEN_PATH            = 
 
+# You can include diagrams made with dia in doxygen documentation. Doxygen will
+# then run dia to produce the diagram and insert it in the documentation. The
+# DIA_PATH tag allows you to specify the directory where the dia binary resides.
+# If left empty dia is assumed to be found in the default search path.
+
+DIA_PATH               = 
+
 # If set to YES, the inheritance and collaboration graphs will hide inheritance
 # and usage relations if the target is undocumented or is not a class.
 # The default value is: YES.
@@ -2207,7 +2224,7 @@ INCLUDED_BY_GRAPH      = YES
 
 # If the CALL_GRAPH tag is set to YES then doxygen will generate a call
 # dependency graph for every global function or class method.
-# 
+#
 # Note that enabling this option will significantly increase the time of a run.
 # So in most cases it will be better to enable call graphs for selected
 # functions only using the \callgraph command.
@@ -2218,7 +2235,7 @@ CALL_GRAPH             = NO
 
 # If the CALLER_GRAPH tag is set to YES then doxygen will generate a caller
 # dependency graph for every global function or class method.
-# 
+#
 # Note that enabling this option will significantly increase the time of a run.
 # So in most cases it will be better to enable caller graphs for selected
 # functions only using the \callergraph command.
@@ -2256,7 +2273,7 @@ DOT_IMAGE_FORMAT       = png
 
 # If DOT_IMAGE_FORMAT is set to svg, then this option can be set to YES to
 # enable generation of interactive SVG images that allow zooming and panning.
-# 
+#
 # Note that this requires a modern browser other than Internet Explorer. Tested
 # and working are Firefox, Chrome, Safari, and Opera.
 # Note: For IE 9+ you need to set HTML_FILE_EXTENSION to xhtml in order to make
@@ -2285,6 +2302,12 @@ DOTFILE_DIRS           =
 
 MSCFILE_DIRS           = 
 
+# The DIAFILE_DIRS tag can be used to specify one or more directories that
+# contain dia files that are included in the documentation (see the \diafile
+# command).
+
+DIAFILE_DIRS           = 
+
 # The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of nodes
 # that will be shown in the graph. If the number of nodes in a graph becomes
 # larger than this value, doxygen will truncate the graph, which is visualized
@@ -2312,7 +2335,7 @@ MAX_DOT_GRAPH_DEPTH    = 0
 # Set the DOT_TRANSPARENT tag to YES to generate images with a transparent
 # background. This is disabled by default, because dot on Windows does not seem
 # to support this out of the box.
-# 
+#
 # Warning: Depending on the platform used, enabling this option may lead to
 # badly anti-aliased labels on the edges of a graph (i.e. they become hard to
 # read).